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Lirafugratinib

Previously treated FGFR2 fusion or rearrangement-positive cholangiocarcinoma

Also known as Lyrfigtu, RLY-4008
Regulatory submission
NDA submitted January 2026
158 sources

Section 3 of 6

Product information and disease description

353 evidence topics · 106 sources

Product description

Phase of product development

Summary: development and regulatory status as of September 2026

Lirafugratinib (RLY-4008), discovered by Relay Therapeutics and licensed worldwide to Elevar Therapeutics in December 2024, was approved by the FDA on 23 September 2026 as Lyrfigtu capsules for adults with previously treated, unresectable, locally advanced or metastatic cholangiocarcinoma harboring an FGFR2 fusion or other rearrangement. The new drug application (NDA 220425) was received on 27 January 2026, was granted priority review, and used the Real-Time Oncology Review pilot program and the Assessment Aid. Lirafugratinib had received orphan drug designation for cholangiocarcinoma in January 2022 and breakthrough therapy designation in 2023. The application was not referred to an advisory committee. The approval letter states the application is approved for use as recommended in the agreed-upon labeling, and neither the letter nor the prescribing information contains the accelerated approval statement that appears in the labeling of pemigatinib, futibatinib, and infigratinib; the ReFocus cohort had been described in 2024 as designed to support accelerated approval. Approval rests on 116 FGFR inhibitor-naive participants in the single-arm phase 1/2 REFOCUS trial (NCT04526106), with an objective response rate of 46% (95% CI 36 to 55) and a median duration of response of 11.8 months. The FDA required a randomized trial comparing 70 mg once daily with a lower dosage and a P-gp and BCRP drug interaction trial, and accepted a commitment to validate a companion diagnostic. Elevar expects product availability in the fourth quarter of 2026. A marketing authorization application was submitted to the European Medicines Agency in September 2026, and a phase 2 tumor-agnostic study (ReFocus202, NCT07359820) began dosing in June 2026.

Expedited programs: priority review, breakthrough therapy, orphan drug designation, and Real-Time Oncology Review

Product information

Generic, brand name and therapeutic class of product
Dosage forms and strengths
Average sales price and wholesale acquisition cost
Wholesale acquisition cost and average sales price of lirafugratinib

No evidence found.

American hospital formulary service (AHFS), or other drug classification
AHFS classification or ATC code

No evidence found.

Indication
Pharmacology
Mechanism of action
Pharmacodynamics
Pharmacokinetics
Contraindications/Warnings/Precautions/Adverse effects
Warnings and precautions
Summary: labeled contraindications, warnings, and adverse reactions

The prescribing information lists no contraindications and three warnings and precautions: ocular toxicity, hyperphosphatemia and soft tissue mineralization, and embryo-fetal toxicity. Among 385 participants in the REFOCUS safety population (232 with cholangiocarcinoma and 153 with other solid tumors), retinal pigment epithelial detachment occurred in 31% (grade 3 in 1.8%), with a median time to onset of 57 days, blurred vision in 18%, dry eye in 38%, corneal toxicity or keratitis in 11%, and hyperphosphatemia in 21%, with a median time to onset of 15 days and one dose interruption (0.3%). Ophthalmological examination including optical coherence tomography of the macula is required before treatment, every 2 months for the first 13 months, and every 4 months thereafter. Among the 116 participants with cholangiocarcinoma, serious adverse reactions occurred in 32% and one participant died of hemorrhage; the most frequent adverse reactions were nail toxicity (89%, grade 3 or 4 in 12%), palmar-plantar erythrodysesthesia syndrome (82%, grade 3 or 4 in 33%), stomatitis (80%, grade 3 or 4 in 12%), and alopecia (66%). Treatment-related adverse events led to dose reduction in 75.9%, dose interruption in 82.8%, and discontinuation in 4.3% of participants in the ASCO Gastrointestinal Cancers Symposium 2026 report, and the prescribing information reports permanent discontinuation for an adverse reaction in 5%, dosage interruption in 88%, and dose reduction in 81%. The FDA required a postmarketing randomized trial to characterize severe stomatitis, palmar-plantar erythrodysesthesia syndrome, retinal pigment epithelial detachment, and nail toxicities at 70 mg once daily compared with a lower dosage.

Adverse reactions in 15% or more of participants with cholangiocarcinoma (N=116)
Adverse reactionAll grades (%)Grade 3 or 4 (%)
Nail toxicity“89”“12”
Palmar-plantar erythrodysaesthesia syndrome“82”“33”
Stomatitis“80”“12”
Alopecia“66”“0”
Dry eye“53”“0”
Dry mouth“50”“0”
Fatigue“43”“3.4”
Dysgeusia“39”“0.9”
Retinal pigment epithelial detachment“38”“1.7”
Constipation“37”“0.9”
Dry skin“37”“0”
Infection“34”“8”
Rash“34”“5”
Abdominal pain“28”“3.4”
Blurred vision“22”“0.9”
Diarrhea“22”“0.9”
Hemorrhage“22”“2.6”
Nausea“21”“1.7”
Decreased appetite“20”“0”
Laboratory abnormalities worsening from baseline in participants with cholangiocarcinoma
Laboratory abnormalityAll grades (%)Grade 3 or 4 (%)
Phosphate increased“75”“0”
Alanine aminotransferase increased“53”“7”
Creatinine increased“52”“0.9”
Sodium decreased“49”“20”
Hemoglobin decreased“49”“8”
Lymphocytes decreased“47”“7”
Blood bilirubin increased“45”“5”
Aspartate aminotransferase increased“42”“5”
Platelets decreased“39”“3.4”
Glucose increased“37”“5”
Special populations
Drug/Drug, drug/disease interactions
Effects of other drugs on Lirafugratinib
Effects of Lirafugratinib on other drugs
Preclinical inhibition of ABCG2 (BCRP)-mediated efflux

“Our findings reveal that lirafugratinib, at concentrations that do not impair cell viability, restores sensitivity to ABCG2-substrate chemotherapeutic drugs and enhances apoptosis in ABCG2-overexpressing nonsmall cell lung cancer cells.” (opens the source at this quote in a new tab)

“Mechanistically, lirafugratinib impedes the efflux capability of ABCG2 without altering its protein expression.” (opens the source at this quote in a new tab)

“Submicromolar concentrations of lirafugratinib (100–500 nM) markedly reduced the IC50 values of the ABCG2 substrate drugs mitoxantrone, SN-38, and topotecan” (opens the source at this quote in a new tab)

“In contrast, lirafugratinib had no effect on the cytotoxicity of the non-ABCG2 substrate cisplatin, used as a negative control (Fig. 2D, H, L). Notably, lirafugratinib did not enhance the efficacy of chemotherapeutic agents in ABCB1-overexpressing models (data not shown), further supporting its selectivity toward ABCG2.” (opens the source at this quote in a new tab)

“At 1 μM, lirafugratinib significantly increased intracellular PhA fluorescence in H460-MX20 (Fig. 4A), A549-Bec150 (Fig. 4B), and ABCG2-transfected HEK293 cells (Fig. 4C), to an extent comparable” (opens the source at this quote in a new tab)

“These findings indicate that ABCG2 overexpression does not measurably influence lirafugratinib cytotoxicity and support the conclusion that lirafugratinib is not efficiently transported by ABCG2 at cytotoxic concentrations.” (opens the source at this quote in a new tab)

Dosing and administration
Dosage
Administration
Access and distribution
Specialty pharmacy and distribution network

No evidence found.

Co-prescribed/Concomitant therapies
Effect of Lirafugratinib on quality measures
Product-specific effect on quality measures

No evidence found.

Product comparison
Summary: comparison with other FGFR inhibitors approved for FGFR2 fusion-positive cholangiocarcinoma

Three other FGFR inhibitors have been approved by the FDA for previously treated FGFR2 fusion- or rearrangement-positive cholangiocarcinoma, each under accelerated approval based on response rate and duration of response: pemigatinib (Pemazyre, 2020), infigratinib (Truseltiq, 2021; withdrawn 16 May 2024, with United States distribution discontinued), and futibatinib (Lytgobi, 2022). Their pivotal single-arm trials reported objective response rates of 36% (pemigatinib, N=107), 23% (infigratinib, N=108), and 42% (futibatinib, N=103), with median durations of response of 9.1, 5.0, and 9.7 months; the FIGHT-202 final analysis reported an objective response rate of 37.0% for pemigatinib. In REFOCUS, lirafugratinib produced an objective response rate of 46% (N=116) with a median duration of response of 11.8 months. The labels differ in dosing (lirafugratinib 70 mg and futibatinib 20 mg once daily continuously; pemigatinib 13.5 mg for 14 of 21 days; infigratinib 125 mg for 21 of 28 days on an empty stomach). Hyperphosphatemia was reported in 93%, 82%, and 88% of participants receiving pemigatinib, infigratinib, and futibatinib across clinical trials, with phosphate-lowering therapy or binders in 33%, 83%, and 77%, compared with 21% for lirafugratinib, consistent with its preclinical selectivity over FGFR1. Retinal pigment epithelial detachment was reported in 31% of participants receiving lirafugratinib, with monitoring that included optical coherence tomography, and in 9% to 11% of participants receiving the other agents, whose trials did not routinely include optical coherence tomography; lirafugratinib labeling requires examination every 2 months for 13 months, compared with every 2 months for 6 months for pemigatinib and futibatinib. Pemigatinib and infigratinib were approved with an FDA-approved test, whereas no FDA-authorized test is available for lirafugratinib. Preclinically, lirafugratinib retained potency against the FGFR2 V564F gatekeeper mutation, against which pan-FGFR inhibitors showed a more than 55-fold loss of potency. No head-to-head or indirect treatment comparison of lirafugratinib with another FGFR inhibitor has been published. In an institutional cohort in which the second FGFR inhibitor after progression was lirafugratinib in 12 participants and futibatinib in 10, all 3 partial responses (13.6%) occurred with lirafugratinib, and the authors state that differences in clinical activity across FGFR inhibitors may reflect confounding factors. For the comparators, a matching-adjusted indirect comparison reviewed by NICE gave hazard ratios for futibatinib compared with pemigatinib of 0.95 (95% CI 0.72 to 1.21) for overall survival and 1.07 (95% CI 0.86 to 1.30) for progression-free survival. A reported average monthly United States price of $44,000 for futibatinib was identified, and NICE reports list prices in England of £7,159.04 for a pack of 14 pemigatinib 13.5 mg tablets and £2,386.33 per pack of futibatinib; no lirafugratinib price has been published.

Pemigatinib (Pemazyre): FIGHT-202 efficacy in the label
Efficacy parameterFIGHT-202, N=107
ORR (95% CI)“36% (27, 45)”
Median DoR, months (95% CI)“9.1 (6.0, 14.5)”
Patients with DoR ≥ 6 months, n (%)“24 (63%)”
Futibatinib (Lytgobi): TAS-120-101 efficacy in the label
Efficacy parameterTAS-120-101, N=103
ORR (95% CI)“42% (32, 52)”
Median DoR, months (95% CI)“9.7 (7.6, 17.1)”
DoR ≥6 months, n (%)“31 (72%)”
Head-to-head or indirect treatment comparisons

No evidence found.

Place of product in therapy

Disease description

Definition and etiology
Summary: definition of cholangiocarcinoma and of FGFR2 fusion or rearrangement-positive disease

Cholangiocarcinoma is a malignancy of the biliary epithelium, usually an adenocarcinoma, classified by anatomic site as intrahepatic, perihilar, or distal. In the United States, perihilar disease accounts for approximately 50% to 60% of cholangiocarcinomas, distal disease for 20% to 30%, and intrahepatic disease for 10% to 20%, and cholangiocarcinoma comprises approximately 15% of primary liver tumours. Together with gallbladder and ampullary cancer, it forms biliary tract cancer, which accounts for less than 1% of all cancers worldwide.

The indication is defined by a genomic alteration. FGFR2 fusions or rearrangements occur almost exclusively in intrahepatic cholangiocarcinoma. The fusions most commonly join FGFR2 exons 1 to 17, which carry the extracellular and kinase domains, to one of many partner genes, and loss of the C-terminal negative regulatory domain encoded by exon 18 leads to constitutive kinase activity. The previously treated population is the population in which lirafugratinib was approved: adults with unresectable, locally advanced or metastatic disease after prior systemic therapy, which in REFOCUS meant prior chemotherapy or chemoimmunotherapy without a prior FGFR inhibitor.

Most established risk factors for cholangiocarcinoma share chronic inflammation of the biliary epithelium and bile stasis, including choledochal cyst, Caroli disease, primary sclerosing cholangitis, choledocholithiasis, cirrhosis, chronic hepatitis B and C, and, in endemic regions, liver fluke infection; cirrhosis, non-alcoholic fatty liver disease, and hepatitis B are more strongly associated with intrahepatic disease. In most locations the majority of cases have no identifiable risk factor. No risk factor specific to FGFR2 fusion-positive disease was identified in the cited sources; in one institutional series FGFR alterations were more frequent in participants aged 40 years or younger (20%) than in older participants (6.7%).

Definition: anatomical classification of cholangiocarcinoma
Etiology: reported effect sizes for risk factors for cholangiocarcinoma
Epidemiology
Incidence of Previously treated FGFR2 fusion or rearrangement-positive cholangiocarcinoma
Summary: incidence of cholangiocarcinoma and of the FGFR2 fusion-positive previously treated population

No registry reports the incidence of previously treated FGFR2 fusion or rearrangement-positive cholangiocarcinoma. It is estimated from the incidence of cholangiocarcinoma, the frequency of FGFR2 fusions or rearrangements, and the proportion of participants who reach later-line therapy. The American Cancer Society estimates that about 8,000 people in the United States are diagnosed with bile duct cancer each year, and notes that the true number is likely higher because some cases are misclassified. In the Surveillance, Epidemiology, and End Results program, the age-adjusted incidence of intrahepatic cholangiocarcinoma rose 148.8% between 2001 and 2017, from 0.80 to 1.99 per 100 000 person-years, while extrahepatic cholangiocarcinoma rose 7.5%.

FGFR2 fusions or rearrangements are reported in 10% to 16% of intrahepatic cholangiocarcinomas and in 9.2% of 6,802 cholangiocarcinoma samples profiled in one genomic dataset (see 2.2.1.2.2). Only part of the incident population reaches second-line treatment: ABC-06 reported that 15% to 25% receive second-line therapy, and 46% of 413 participants in a United States commercial-claims cohort with advanced biliary tract cancer initiated a second line. Relay Therapeutics estimated that FGFR2-mediated cancers of all tumour types affect approximately 11,000 late-line patients annually in the United States.

Incidence: estimated new United States cases and deaths in 2026
Cancer siteEstimated new cases, both sexesEstimated deaths, both sexes
Liver and intrahepatic bile duct“42,340”“30,980”
Gallbladder and other biliary“12,640”“4590”
All sites“2,114,850”“626,140”
Incidence: global estimates for 2024
Cancer siteEstimated new cases worldwide, 2024Percentage of all casesEstimated deaths worldwide, 2024
Liver and intrahepatic bile duct“843,045”“4.1”“732,489”
Gallbladder“126,384”“0.6”“92,029”
Prevalence of Previously treated FGFR2 fusion or rearrangement-positive cholangiocarcinoma
Summary: prevalence of FGFR2 fusions or rearrangements in cholangiocarcinoma

Reported frequencies of FGFR2 fusions or rearrangements in intrahepatic cholangiocarcinoma are 13.6% (9 of 66) by reverse-transcriptase polymerase chain reaction, 13% (12 of 96) by fluorescence in situ hybridization, 14% in a sequenced institutional cohort, and 13.9% in a European routine-testing cohort. Central prescreening for FIGHT-202 confirmed FGFR2 fusions or rearrangements in 107 of 1,206 participants (9%), which the investigators describe as broadly consistent with the published range of 10% to 16%. In a comprehensive genomic profiling dataset of 6,802 cholangiocarcinoma samples, 9.2% had FGFR2 rearrangements, of which 76.1% were classified as fusions and 20.7% as other rearrangements, with BICC1 the most common partner (26.7%). In the FIGHT-202 prescreening cohort analysed for clinicogenomic correlates, 74 participants (6.1%) had FGFR2 rearrangements, 15.2% in the United States, 7.4% in Europe, and 2.2% in the rest of the world, which the investigators attribute partly to inclusion of extrahepatic cholangiocarcinoma. In a multicentre Italian cohort of 312 participants with advanced intrahepatic cholangiocarcinoma, FGFR2 fusions or rearrangements occurred in 10.6%. In a surgical FISH series, FGFR2 rearrangements were found in 12/96 intrahepatic, 0/25 perihilar, and 0/31 extrahepatic tumours. Frequency varied with the biopsy site sampled (9% of primary tumour biopsies, 6% and 4% of other sites) and was enriched 2.1-fold in participants with African ancestry. The FGFR2 cohort of FIGHT-202 contained greater proportions of women and of participants younger than 65 years than the other cohorts, and in a resected cohort FGFR2 fusion was more often present in younger (53 vs. 62 years) and female (83 vs. 49%) participants, whereas a European routine-testing cohort found no association between FGFR2 fusions and age or sex.

Overall prevalence of the underlying cancer is limited by short survival: SEER estimated 116,514 people living with liver and intrahepatic bile duct cancer in the United States in 2023, and the 16-year limited-duration prevalence of cholangiocarcinoma from 2001 to 2017 was reported as 5.92, higher for extrahepatic (4.23) than intrahepatic (1.69) disease. Nearly 40% of biliary tract cancers harbour a genetic alteration that is a potential target for precision medicine.

FGFR2 rearrangement frequency in a comprehensive genomic profiling dataset of cholangiocarcinoma
FGFR2 rearrangement classes and fusion partners in a comprehensive genomic profiling dataset

“Of the 6802 samples tested, 629 (9.2%) had a total of 632 FGFR2 rearrangement events. These events were further classified as fusions (n = 481; 76.1%), rearrangements (n = 131; 20.7%), truncations (n = 18; 2.8%), and duplications (n = 2; 0.3%) (Figure 1A).” (opens the source at this quote in a new tab)

“The most common fusion partner was BICC1 (n = 169; 26.7%), followed by AHCYL1 (n = 19; 3.0%), TACC2 (n = 17; 2.7%), and CCDC6 (n = 16; 2.5%); 126 (19.9%) rearrangement events had a partner gene that was unique to a single patient (N-of-One), and 35 (11.1%) for which the partner was observed in only two patients (N-of-Two) (Figure 1B and Supplemental Table S5).” (opens the source at this quote in a new tab)

“Most FGFR2 rearrangements (54.4%) involved intrachromosomal rearrangements on chromosome 10, with BICC1, CCDC6, and TACC2 being the most common rearrangement partners.” (opens the source at this quote in a new tab)

“The frequency of FGFR2 rearrangements observed in our real-world data set of 6802 patients with CCA was 9.2%, which is slightly lower than estimates for iCCA of 10% to 15%.” (opens the source at this quote in a new tab)

“Given the lack of detailed clinical information in this data set, the cohort is likely not strictly iCCA and may include eCCA, perihilar CCA, and cancers of unknown primary, as the genomic test may have been ordered before the physician received the results of a full diagnostic assessment.” (opens the source at this quote in a new tab)

Natural history, survival, and mortality
Summary: survival across the disease course and in FGFR2 fusion-positive disease

Cholangiocarcinoma is usually diagnosed at an advanced stage. SEER reports 5-year relative survival for liver and intrahepatic bile duct cancer of 37.4% for localized, 13.4% for regional, and 3.6% for distant disease, and across 40,030 SEER cholangiocarcinoma cases diagnosed from 2001 to 2017 median overall survival from diagnosis was 8 months overall and 6 months for intrahepatic disease. In the first-line advanced setting, median overall survival was 12.9 months with durvalumab plus gemcitabine and cisplatin in the TOPAZ-1 three-year update and 12.7 months with pembrolizumab plus gemcitabine and cisplatin in KEYNOTE-966. After progression, median overall survival in ABC-06 was 6.2 months with FOLFOX plus active symptom control and 5.3 months with active symptom control alone.

FGFR2 fusion-positive disease has a comparatively favourable natural history. In an institutional series of 377 participants, FGFR genetic aberrations were associated with longer overall survival (37 versus 20 months, P < .001), which remained significant after excluding participants treated with FGFR inhibitors, and co-occurring TP53 and CDKN2A/B alterations were associated with shorter survival. Median cancer-specific survival was 123 versus 37 months with and without FGFR2 translocations in a FISH series, 5-year overall survival after resection of intrahepatic cholangiocarcinoma was 83% versus 32% by FGFR2 fusion status, and in a multicentre real-world cohort FGFR2 fusions or rearrangements retained a prognostic association with overall survival after exclusion of participants treated with targeted therapy. In the multicentre cohort, median overall survival was 26.5 months with and 17.0 months without FGFR2 fusions or rearrangements, with a hazard ratio of 0.54 (95% CI 0.30-0.95) at multivariate analysis, and after resection of intrahepatic cholangiocarcinoma 10-year overall survival was 46 vs. 22% by FGFR2 fusion status. Not every series found a difference: outcome did not differ significantly by FGFR2 fusion status in a Japanese RT-PCR series, and in a European routine-testing cohort median overall survival was 32.2 versus 13.6 months (HR = 0.81, p = 0.52). Participants with FGFR2 rearrangements may be less likely to benefit from first-line platinum chemotherapy, although time to progression did not differ by FGFR2 status in one sequenced cohort.

Recurrence and death after resection by FGFR2 translocation status in a FISH series

“For the 139 cases without FGFR2 translocations, 77 patients (55%) developed metastases or local recurrence, and 99 patients (71%) died during clinical follow-up.” (opens the source at this quote in a new tab)

“Six of the 12 (50%) patients whose tumors harbored FGFR2 translocations died during clinical follow-up, and 6 patients were alive without evidence of disease. Only 3 patients (25%) developed metastases or local recurrence.” (opens the source at this quote in a new tab)

“The median cancer-specific survival interval for patients with FGFR2 translocations was estimated at 123 months (95% CI, 51-123 months) and was significantly longer than for patients without FGFR2 translocations (P = .039).” (opens the source at this quote in a new tab)

“The disease-free intervals for the 3 cases were 26 months, 63 months, and 125 months. This was also significantly longer compared to the cases without FGFR translocations (P = .007).” (opens the source at this quote in a new tab)

“In retrospective studies of patients treated with various combinations of therapy and not matched for performance status and other characteristics, it is difficult to determine the generalizability of survival data.” (opens the source at this quote in a new tab)

“Therefore, a larger study of patients who are matched for age, performance status, underlying function and other factors is warranted to appropriately determine if there truly is a prognostic difference.” (opens the source at this quote in a new tab)

Survival after resection by FGFR2 fusion status: pathological features, prognostic factors, and study limitations

“When iCCA patients positive for FGFR2 fusions were compared to patients without, FGFR2 fusion patients were found to have improved 5-year (83 vs. 32%, p = 0.010) and 10-year (46 vs. 22%, p = 0.042) OS, respectively (Fig. 2), suggesting that CCA with FGFR2 fusions may have a more indolent course.” (opens the source at this quote in a new tab)

“Overall, there were no significant differences between iCCA patients with FGFR2 fusion and wildtype FGFR in terms of vascular invasion, perineural invasion, lymph node positivity, or presence of satellite lesions.” (opens the source at this quote in a new tab)

“Perineural invasion (HR:3.23, 95% CI: 1.39–7.55, p = 0.007), increasing tumor size (HR = 1.19, 95% CI: 1.08–1.31, p < 0.001), and lymph node invasion (HR = 2.85, 95% CI: 1.37–5.92, p = 0.005) correlated significantly with increased risk of death.” (opens the source at this quote in a new tab)

“Importantly, this cohort of patients were treated prior to widespread adoption of adjuvant therapy for resected CCA, and this is reflected in the fact that adjuvant therapy for patients with FGFR2 fusion was noted in a minority of patients (adjuvant radiotherapy, n = 1, 8.3% and adjuvant systemic chemotherapy, n = 2, 16.7%). Moreover, none of the patients in this cohort received FGFR-targeted therapy.” (opens the source at this quote in a new tab)

“Our work, predating the widespread use of adjuvant therapy in resected patients suggests that the biology of disease in patients with FGFR2 fusion is more indolent, which cannot be explained by common surrogates of biology alone, such as the incidence of satellite lesions or lymph node metastases.” (opens the source at this quote in a new tab)

“Our study has several limitations including sources of bias that are inherent in retrospective studies.” (opens the source at this quote in a new tab)

“Due to small numbers of FGFR2 fusion patients, our analyses should be considered exploratory and may be subject to both Type 1 and Type 2 errors.” (opens the source at this quote in a new tab)

Overall and relapse-free survival by FGFR2 fusion status in a multicentre real-world cholangiocarcinoma cohort

“Of all the individual gene alterations, only FGFR2 fusions/rearrangements showed a significant association with longer OS (26.5 months, 95% CI 17.4-48.2 vs. 17.0 months, 95% CI 15.4-19.5; p = 0.006) at univariate assessment.” (opens the source at this quote in a new tab)

“At univariate analysis, FGFR2 alterations demonstrated a positive correlation with OS (HR 0.49, 95% CI 0.33-0.74, p = 0.006), confirmed at multivariate analysis (HR 0.54, 95% CI 0.30-0.95, p = 0.035) after adjusting for confounders, such as carbohydrate antigen 19-9 levels (>500 UI/ml) before first-line chemotherapy, liver metastases, synchronous metastatic disease and multiple sites of metastases.” (opens the source at this quote in a new tab)

“Moreover, FGFR2 fusions/rearrangements and IDH1 R132x mutations were evaluated as potential determinants of benefit from first-line platinum-based chemotherapy. No role was found for either alteration” (opens the source at this quote in a new tab)

“Seventeen patients with FGFR2-fused/rearranged and 28 patients with IDH1-mutated BTCs were included in the analysis for RFS. Median RFS was 10.3 months (95% CI 2.0-18.9) in the former” (opens the source at this quote in a new tab)

“no significant difference was observed compared to wild-type counterparts (12.3 [95% CI 11.1-14.6] months and 12.5 [95% CI 11.0-15.0] months for FGFR2 and IDH1 wild-type, respectively, both p >0.05).” (opens the source at this quote in a new tab)

“our data support a positive prognostic role for FGFR2 fusion/rearrangements, but not IDH1 mutations. However, not all published data confirm the same prognostic value of these alterations.” (opens the source at this quote in a new tab)

Pathophysiology
Summary: cholangiocarcinogenesis and FGFR2 fusion signalling

Cholangiocarcinoma arises predominantly from cholangiocytes and can also develop from peribiliary glands and hepatocytes. Chronic inflammation, growth factors, and bile acids in the tumour microenvironment drive carcinogenesis, and the tumours are highly desmoplastic. Genomic alterations track with anatomic subtype: FGFR2 fusions, IDH1 and IDH2 mutations, and BAP1 mutations characterize intrahepatic disease, and in one sequenced cohort the most commonly altered genes in intrahepatic cholangiocarcinoma were IDH1 (30%), ARID1A (23%), BAP1 (20%), TP53 (20%), and FGFR2 fusions (14%).

FGFR2 fusions retain the extracellular and kinase domains of FGFR2 and lose the C-terminal negative regulatory region, and truncation of FGFR2 after exon 17 is oncogenic in itself. Fusion partners exhibit oligomerization capability, and fusion proteins interact in the absence of FGF ligand, so kinase activation is ligand-independent. Signalling proceeds through the MAPK (RAS, RAF, MEK, ERK) and PI3K, AKT, and mTOR pathways; expression of FGFR2 fusion kinases activated MAPK and conferred transforming ability in cell models, and patient-derived organoids were dependent on Ras-Erk signalling. Fusion partners are diverse: 56 different partners were identified among 107 participants in FIGHT-202, 42 (75%) unique to one participant, with BICC1 the most common (29%). FGFR2 fusions usually co-occur with inactivation of TP53, CDKN2A, or BAP1, and in a Japanese series of 102 cholangiocarcinomas they were mutually exclusive with KRAS and BRAF mutations. All tested FGFR2 rearrangement partners were oncogenic and sensitive to FGFR2 inhibition in vitro, which the authors interpret as indicating that the FGFR2 fusion, irrespective of partner gene, is the clinically important variable.

Pathophysiology: cell of origin and desmoplastic tumour immune microenvironment
FGFR2-AHCYL1 and FGFR2-BICC1 fusions: genomic origin, constitutive activation, and mutual exclusivity with KRAS and BRAF mutations

“The FGFR2-AHCYL1 and FGFR2-BICC1 fusion proteins are likely to form homodimers through the coiled-coil motif of AHCYL1” (opens the source at this quote in a new tab)

“FGFR2 and BICC1 are located on the long arm of chromosome 10 in opposite directions, suggesting that the FGFR2-BICC1 fusion is generated by intrachromosomal inversion (Supporting Fig. 1B).” (opens the source at this quote in a new tab)

“The wild-type fusion expressing cells showed constitutive tyrosine phosphorylation in the activation loop of the FGFR kinase domain.” (opens the source at this quote in a new tab)

“Immunoblot analysis revealed that activation of MAPK, but not AKT or STAT3, was induced in clones expressing FGFR2-AHCYL1 and FGFR2-BHCC1.” (opens the source at this quote in a new tab)

“KRAS mutations were detected in 19 cases (19/102, 17.8%) and BRAF mutations in one (1/102, 1%); these mutations were mutually exclusive with the FGFR2 fusions (Fig. 3A; Supporting Table 4).” (opens the source at this quote in a new tab)

“The identification of two recurrent FGFR2 fusions (FGFR2-AHCYL1 and FGFR2-BICC1) that are mutually exclusive with KRAS/BRAF mutations warrants a new molecular classification of cholangiocarcinoma and suggests a novel therapeutic approach in cholangiocarcinomas driven by these fusions.” (opens the source at this quote in a new tab)

“Association between FGFR2 fusion positivity and hepatitis virus infection may suggest an involvement of the virus in the chromosomal rearrangements in CC.” (opens the source at this quote in a new tab)

FGFR2 fusion-driven transformation of mouse liver organoids and ligand-independent signalling

“Chromosomal rearrangements generate FGFR2 fusions (FFs) in 12–15% of intrahepatic CCAs.” (opens the source at this quote in a new tab)

“In FFs, FGFR2 residues 1-768 fuse to sequences encoded by a diverse array of partner genes (>60) causing oncogenic FF activation.” (opens the source at this quote in a new tab)

“It is thought that the fusion partner forces constitutive dimerization of adjacent FGFR2 sequences, triggering constitutive activation of the FGFR2 tyrosine kinase domain (TKD) and attendant oncogenic signaling.” (opens the source at this quote in a new tab)

“When expressed at levels comparable to those of F-TACC3, wild-type FGFR2IIIb required ligand stimulation in order to undergo catalytic activation (Fig. 1D). Thus, constitutive FF signaling in the above liver organoid models is caused by the ligand-independent mode of activation typical of FGFR2 fusions.” (opens the source at this quote in a new tab)

“In line with this observation, mutations affecting tumor suppressor genes (TSGs), most notably TP53, CDKN2A or BAP1, co-occur in the large majority of iCCA carrying FGFR2 fusions.” (opens the source at this quote in a new tab)

“Thus, FGFR2 fusions drive oncogenic conversion of liver bipotent precursors along the cholangiocellular lineage.” (opens the source at this quote in a new tab)

“All of the above phosphorylation events required FF catalytic activity, because they were suppressed by BGJ398 (Fig. 5A and S9A-C).” (opens the source at this quote in a new tab)

“The above data support a model whereby Erk1/2 activation plays a necessary role in shaping addiction of iCCA cells to FF oncogenic signaling.” (opens the source at this quote in a new tab)

Diagnosis
Summary: diagnostic pathway and detection of FGFR2 fusions or rearrangements

Diagnosis rests on cross-sectional imaging followed by histological or cytological confirmation, because no radiological pattern is specific for cholangiocarcinoma. Guidelines recommend a core biopsy for pathology and molecular profiling before non-surgical treatment, molecular analysis in advanced disease suitable for systemic treatment, and profiling when first-line systemic treatment is initiated; parallel testing by next-generation sequencing is preferred over single-gene testing, and ESMO recommends tumour next-generation sequencing in advanced cholangiocarcinoma. FGFR inhibitors are recommended for FGFR2 fusions after at least one prior line of systemic therapy.

FGFR2 fusion detection is technically demanding because partners are diverse. In 226 cases tested by three methods, detection rates were 9.7% with RNA-based sequencing, 7.1% with DNA-based sequencing, and 10.2% with FISH, and against RNA-confirmed fusions DNA-based sequencing had a sensitivity of 71.4% and FISH 95.2%. In an interlaboratory ring trial, 13 of 16 centres (81%) passed the sequencing round, and partner-agnostic methods were judged superior. FoundationOne CDx is FDA approved for detecting FGFR2 fusions or rearrangements for pemigatinib, with an adjusted positive percentage agreement of 87.1% against an externally validated assay and 100% agreement on all measures against the F1 CLIA/CAP assay, although 27 of 107 FGFR2 rearrangement-positive participants enrolled in FIGHT-202 could not be evaluated with it because of insufficient DNA; the futibatinib label states that no FDA-approved test is available, and the lirafugratinib approval letter requires validation studies to support labeling of a companion diagnostic using blood or tissue. Circulating tumour DNA detected FGFR2 rearrangements in 5.3% of cholangiocarcinoma liquid biopsies against 7.6% of tissue samples, rising to 8.4% when tumour fraction was 1% or higher, and detected 84% of tissue-confirmed FGFR2 fusions or rearrangements in one study, whose authors advise confirming fusions with unidentified partners by tissue profiling. ESMO ranks FGFR2 fusions at ESCAT level IB, with an estimated prevalence of 5%-15% of intrahepatic cholangiocarcinomas, and notes that a DNA-based test might miss a fusion whose break point region is not fully covered by the gene panel, whereas RNA-based panels identify the fusion transcript and the fusion partner. In a multicentre Italian cohort, extended molecular profiling was performed in 79.9% of participants with advanced cholangiocarcinoma, and 26 (18.7%) of the 139 participants with an ESCAT I-III alteration received a corresponding tailored treatment.

FoundationOne CDx clinical validation, limit of detection, and discordant cases

“The positive percentage agreement, negative percentage agreement, overall percentage agreement, positive predictive value, and negative predictive value all exhibited 100% agreement between the F1CDx assay and the F1 CLIA/CAP assay.” (opens the source at this quote in a new tab)

“The 80 enrolled patients who tested positive with both the F1 CLIA/CAP assay and F1CDx had a similar objective ORR of 37.5% (95% 2-sided exact CI, 26.9%–49.0%).” (opens the source at this quote in a new tab)

“Of the 107 FGFR2 rearrangement-positive patients enrolled in FIGHT-202, 27 could not be evaluated with F1CDx because of insufficient DNA.” (opens the source at this quote in a new tab)

“Using the empirical hit rate method, the analytical sensitivity was determined to be 10.75 chimeric reads or a tumor purity of 5.31%.” (opens the source at this quote in a new tab)

“F1CDx provided a reproducibility and repeatability of 100% for four of five samples, with one sample (sample number 4) demonstrating slightly lower reproducibility and repeatability of 95.5% and 90%, respectively (Supplemental Table S1).” (opens the source at this quote in a new tab)

“In our study comparison of F1CDx DNA versus RNA-based evNGS, only 2 of 130 patients who tested negative for FGFR2 rearrangement by F1CDx were found to be positive by RNA-based evNGS.” (opens the source at this quote in a new tab)

“Comparably, only 1 of 26 patients who tested positive by F1CDx was negative by RNA-based evNGS.” (opens the source at this quote in a new tab)

“Post hoc analysis of four select FGFR2-N/A rearrangements by RNA-based methods [RNA sequencing or evNGS (ArcherDX FusionPlex)] revealed the presence of in-frame fusions in each case, supporting this hypothesis.” (opens the source at this quote in a new tab)

ESMO guidance on DNA-based and RNA-based sequencing for fusion detection

“ESMO recommends carrying out multigene NGS in patients with advanced cancers in countries where tumour-agnostic targeted therapies are accessible. Cost-effectiveness should be assessed at the local level and the decision to implement NGS should be taken accordingly. It is important for clinicians to ensure that fusions are integrated in the panel.” (opens the source at this quote in a new tab)

“The main point is also to stress the fact that clinicians must assess whether the NGS panel includes the detection of the fusions recommended in a specific disease.” (opens the source at this quote in a new tab)

“DNA sequencing has the advantage that DNA is more stable than RNA. However, DNA sequencing can only identify break points of translocations leading to gene fusions.” (opens the source at this quote in a new tab)

“For example, a test that does not detect a fusion might be false negative if the break point region is not fully covered by the gene panel employed for the diagnostic test.” (opens the source at this quote in a new tab)

“Several limitations of DNA-based fusion gene sequencing are overcome by RNA-based sequencing methods.” (opens the source at this quote in a new tab)

“RNA-based gene panels identify the transcript of the fusion gene resulting from a translocation, and provide data on the ‘expression’ of the fusion transcript, the fusion partner as well as the potential functionality (e.g. out-of-frame versus in-frame fusions).” (opens the source at this quote in a new tab)

“In contrast to DNA-based assays, it does not provide information on break points.” (opens the source at this quote in a new tab)

Diagnosis: uptake of and barriers to extended molecular profiling in routine practice

“EMP was performed in 79.9% of patients with advanced CCA. The rate of EMP increased significantly over time (2017–2023: +25.8%).” (opens the source at this quote in a new tab)

“Our results show that a larger proportion of patients with BTCs have had access to EMP in recent years, with a clear increase of 25.8%, from 43.2% in 2017 to 69.0% in 2023.” (opens the source at this quote in a new tab)

“EMP should at least include the identification of FGFR2 and NTRK rearrangements, IDH1 R132x and BRAF V600E mutations, microsatellite instability (MSI)/mismatch repair (MMR) status and HER2 amplification” (opens the source at this quote in a new tab)

“On the other hand, several limitations to the widespread application of EMP have been identified in daily clinical practice throughout Europe: complex pre-analytical steps, high rates of test failure in samples with low tumor cell content, prolonged turnaround time, increased costs and the need for a dedicated molecular tumor board to correctly interpret the biological data all make the implementation of EMP in BTCs challenging.” (opens the source at this quote in a new tab)

“All the analyses were performed on tissue samples, and no plasma samples were collected to perform molecular profiling.” (opens the source at this quote in a new tab)

“Of the 139 patients harboring a druggable alteration according to ESCAT I-III tiers, only 26 (18.7%) received one or more corresponding tailored treatments.” (opens the source at this quote in a new tab)

Clinical presentation - signs and symptoms
Long-term morbidity
Summary: cumulative morbidity in advanced and second-line disease

Long-term morbidity in advanced biliary tract cancer arises mainly from recurrent biliary obstruction and its management, by infection, and by functional decline after progression on first-line therapy. Active symptom control in the second-line setting is defined to include biliary drainage, antibiotics, analgesia, steroids, anti-emetics, palliative radiotherapy, and transfusion of blood products. In a single-centre series of 171 participants who received a palliative biliary stent, complications occurred in 91 (53%) and cholangitis was the most frequent, in 48 (53%) of those with complications; median survival was 75.5 days. In a United States claims cohort, 69.5% of participants had an all-cause inpatient hospitalization and 65.6% a biliary-tract-cancer-related hospitalization, with a mean stay of 7 days per visit and the largest share of inpatient visits occurring during third-line therapy. Rapid decline in performance status after first-line progression limits how many participants can be treated at all.

Burden of Previously treated FGFR2 fusion or rearrangement-positive cholangiocarcinoma
Humanistic burden and health-related quality of life
Summary: health-related quality of life in advanced and second-line disease

Robust health-related quality-of-life data in cholangiocarcinoma are sparse, which the authors of a disease primer attribute to low incidence, high lethality, limited trial enrollment until recently, and a historical lack of dedicated measurement tools. The EORTC QLQ-BIL21 was validated in 172 participants with cholangiocarcinoma and 91 with gallbladder cancer and measures eating, jaundice, tiredness, pain, and anxiety symptoms alongside the generic QLQ-C30.

In the second-line setting, the ABC-06 quality-of-life analysis found no difference between arms in time to deterioration of the global health scale (adjusted hazard ratio 0.97, 95% CI 0.48 to 1.97, P = 0.937) and found that adding FOLFOX did not worsen global, physical, social, or symptom scores, whereas the active-symptom-control arm declined across several domains including the EQ-5D utility value, which fell from 0.75 at baseline to 0.62 at month 4. In the first-line setting, neither durvalumab nor pembrolizumab added to gemcitabine and cisplatin worsened patient-reported outcomes: median time to deterioration of global health status or quality of life was 7.4 months versus 6.7 months in TOPAZ-1, and estimates were similar between arms in KEYNOTE-966.

Humanistic burden: quality-of-life dynamics from baseline to month 4 in the second-line setting
MeasureActive symptom control, baselineActive symptom control, month 4Active symptom control, P valueActive symptom control plus FOLFOX, baselineActive symptom control plus FOLFOX, month 4Active symptom control plus FOLFOX, P value
EQ-5D utility value“0.75”“0.62”“0.0309”“0.77”“0.70”“0.6183”
QLQ-C30 Summary score“77”“64”“0.0446”“79”“71”“0.1846”
QLQ-C30 Physical health scale“74”“59”“0.0221”“78”“66”“0.1238”
QLQ-C30 Social function scale“77”“61”“0.0272”“76”“65”“0.1307”
QLQ-C30 Role scale“71”“49”“0.0283”“76”“57”“0.2713”
QLQ-C30 Nausea“10”“25”“0.0009”“10”“16”“0.4495”
QLQ-C30 Pain“29”“44”“0.0323”“28”“21”“0.2089”
Humanistic burden: patient-reported outcomes in the first-line setting

“Time to confirmed deterioration estimates were also similar between arms, including for global health status/quality of life (median not reached [NR] in the pembrolizumab arm vs. 21.2 months in the placebo arm; hazard ratio [HR] 0.86, 95% CI 0.70-1.07); jaundice (NR vs. NR; HR 1.20, 95% CI 0.94-1.54), and pain (NR vs. NR; HR 0.79, 95% CI 0.59-1.05).” (opens the source at this quote in a new tab)

“For the six prespecified domains, similar results between treatment arms were observed in the LSM change from baseline to week 18 (Table 1), including GHS/QoL (difference = 0.04, 95% CI -2.52 to 2.60; nominal p = 0.98), physical functioning (difference = 1.24; 95% CI -1.42 to 3.90; nominal p = 0.36) and role functioning (difference = 2.68, 95% CI -0.76 to 6.11; nominal p = 0.13).” (opens the source at this quote in a new tab)

“Comparable changes from baseline to week 18 between the two treatment arms were also seen for jaundice (difference = 0.26; 95% CI -1.35 to 1.87; nominal p = 0.75) and pain (difference = -1.87, 95% CI -4.26 to 0.53; nominal p = 0.13) symptom scale scores, as well as EQ-5D-5L VAS (difference = 0.14; 95% CI -2.18 to 2.46; nominal p = 0.91).” (opens the source at this quote in a new tab)

“The PRO endpoints were exploratory and were not powered to provide statistical significance nor adjusted for multiple comparisons, and therefore the results should be interpreted with caution.” (opens the source at this quote in a new tab)

Economic burden and healthcare resource utilization
Summary: costs and resource use in advanced biliary tract cancer

In a United States commercially insured cohort of participants with advanced biliary tract cancer treated before immuno-oncology regimens were approved, mean per-patient-per-month all-cause costs were $18,274 overall, of which approximately 84% ($15,296) were biliary-tract-cancer-related. Costs rose with each line of therapy, from $19,589 in first line to $22,617 in second line and $33,534 in third line. Outpatient and inpatient utilization were the main cost drivers, and approximately 70% of participants had at least one inpatient visit. Earlier estimates cited in the same study were $7,743 per-patient-per-month for advanced cholangiocarcinoma-associated costs after first-line failure and $20,696 per-patient-per-month for all-cause biliary tract cancer management. In a separate claims analysis of participants receiving pemigatinib, mean per-patient-per-month medical costs were $13,444 for those with a prior cancer-of-unknown-primary diagnosis and $9,881 for those without. In a second United States claims analysis of 221 participants initiating pemigatinib, mean all-cause health care costs were $11,139 per patient per month, of which $8,889 was attributable to cholangiocarcinoma-related care, driven mainly by ambulatory visits and inpatient stays.

Economic impact of Previously treated FGFR2 fusion or rearrangement-positive cholangiocarcinoma on families
Summary: work loss, indirect costs, and family financial exposure

Cholangiocarcinoma imposes measurable work loss and indirect costs on working-age households. In a United States retrospective claims analysis of 1,065 participants with cholangiocarcinoma who had work absence and disability benefits eligibility, mean all-cause days absent per patient per month for illness were 6.0 for intrahepatic and 4.3 for extrahepatic disease, and 12.9% and 6.6% respectively had at least one cholangiocarcinoma-related short-term disability claim. Median indirect costs per patient per month from absenteeism, short-term disability, and long-term disability were $622, $635, and $690 for intrahepatic disease and $304, $589, and $465 for extrahepatic disease. A patient and advocate writing in a disease primer describes declining a first-line clinical trial because insurance would not cover the associated standard-of-care costs and she did not want to put her family in financial distress, and describes travel for trial participation as a source of financial burden.

Economic impact on families: productivity loss and indirect costs

“One thousand and sixty-five patients with CCA were included (iCCA: n = 624 [58.6%]; eCCA: n = 380 [35.7%]). The mean age was 51.9-53.9 years across cohorts. In patients with iCCA and eCCA, respectively, the number of mean all-cause days absent PPPM for illness was 6.0 and 4.3, and 12.9 and 6.6% had ≥1 CCA-related short-term disability claim. Median indirect costs PPPM owing to absenteeism, short-term disability, and long-term disability, respectively, in patients with iCCA were $622, $635, and $690, and $304, $589, and $465 in patients with eCCA.” (opens the source at this quote in a new tab)

“Cholangiocarcinoma (CCA) is associated with poor prognosis. Healthcare-related management likely presents a substantial economic burden associated with time away from work in patients with CCA.” (opens the source at this quote in a new tab)

“In the absenteeism, short-term disability, and long-term disability cohorts, respectively, mean indirect costs associated with productivity loss contributed to 8.6, 7.2, and 6.7% of the total costs ($11,287, $11,887, and $11,977).” (opens the source at this quote in a new tab)

“This suggests that patients in our analysis are more economically advantaged than the overall population of the United States, many of whom do not have access to paid sick leave or are not provided with insurance by their employers. Thus, our analysis may underestimate the productivity losses within the overall population of the United States.” (opens the source at this quote in a new tab)

Economic impact of diagnostic testing
Summary: cost consequences of FGFR2 testing and of diagnostic delay

Eligibility for lirafugratinib requires identification of an FGFR2 fusion or rearrangement, and the guideline recommendation for molecular analysis in advanced disease applies to all participants suitable for systemic treatment. The yield of testing is low relative to the number tested: in 91 biliary tract tumours profiled at one centre, potentially actionable alterations were found in 23.1% and genomically matched therapy was introduced in 7.7%, and FGFR2 fusions or rearrangements occur in approximately 9% of profiled cholangiocarcinomas. The Canadian drug agency estimated that testing costs approximately $38,000 to identify a single patient eligible for pemigatinib. NICE estimated that adding FGFR2 as a target to the NHS panel test would incur an additional cost of £34, or £340 for each additional person identified who is FGFR2-positive, and a Taiwanese cost-effectiveness model applied a genetic testing fee of NT$30,000. Tissue sufficiency also limits yield: 27 of 107 FGFR2 rearrangement-positive participants in FIGHT-202 could not be evaluated with FoundationOne CDx because of insufficient DNA, and ESMO advises that the cost-effectiveness of next-generation sequencing be assessed at the local level. Tissue-based profiling fails in up to 26.8% of metastatic biliary tract cancers, which is one reason for plasma-based testing. Among 221 participants initiating pemigatinib, those with a prior cancer-of-unknown-primary diagnosis had higher ambulatory costs ($8,584 versus $5,308 per patient per month) and shorter median overall survival (10.2 versus 30.7 months), and the authors recommend reflexive genomic testing for cancer of unknown primary. At approval, the FDA required further validation studies before a companion diagnostic for lirafugratinib is specified in labeling.

Approaches to treatment

Current treatment options and standard of care
Gemcitabine and cisplatin plus an immune checkpoint inhibitor
Durvalumab plus gemcitabine and cisplatin: TOPAZ-1 median survival, response, and safety
OutcomeDurvalumab plus gemcitabine and cisplatinPlacebo plus gemcitabine and cisplatin
Objective response rate, no. (%)“91 (26.7)”“64 (18.7)”
Disease control rate, no. (%)“291 (85.3)”“284 (82.6)”
Median duration of response (IQR), mo“6.4 (4.6–17.2)”“6.2 (3.8–9.0)”
Median time to response (IQR), mo“1.6 (1.3–3.0)”“2.7 (1.4–4.1)”
Adverse events, no. (%)Durvalumab plus gemcitabine and cisplatin (n=338)Placebo plus gemcitabine and cisplatin (n=342)
Grade 3 or 4, any cause“256 (75.7)”“266 (77.8)”
Serious, any cause“160 (47.3)”“149 (43.6)”
Leading to discontinuation of any study treatment“44 (13.0)”“52 (15.2)”
Leading to death“12 (3.6)”“14 (4.1)”
Treatment-related, grade 3 or 4“212 (62.7)”“222 (64.9)”
Fluoropyrimidine-Based second-line chemotherapy
Guideline recommendation: FOLFOX as the second-line standard of care
Liposomal irinotecan plus fluorouracil and leucovorin: NALIRICC overall survival, response, toxicity, and subsequent therapy
Reversible FGFR inhibitors
Irreversible FGFR inhibitors
Locoregional therapy
Best supportive care
Limitations of current therapies
Summary: limitations of current treatment for previously treated FGFR2 fusion-positive cholangiocarcinoma

Non-targeted second-line chemotherapy provides limited benefit. In ABC-06, the only positive phase 3 second-line trial, median overall survival was 6.2 months with FOLFOX plus active symptom control versus 5.3 months with active symptom control alone, and an objective response occurred in 4 of 81 participants (5%); the Pan-Asian adaptation of the ESMO guideline downgraded the level of evidence for this recommendation. Randomized results for liposomal irinotecan are inconsistent between NIFTY and NALIRICC; in NALIRICC median overall survival was 6·9 months with liposomal irinotecan plus fluorouracil and leucovorin and 8·2 months in the control group (HR 1·08), and grade 3 or worse adverse events affected 34 (71%) of 48 and 24 (50%) of 48 participants.

Reversible FGFR inhibitors produce responses in a minority and benefit that is time-limited. Pemigatinib produced an objective response rate of 37.0% with median progression-free survival of 7.0 months and median overall survival of 17.5 months in the FIGHT-202 final analysis, and infigratinib an objective response rate of 23.1%; the United States approval of infigratinib was withdrawn in May 2024 after the confirmatory PROOF 301 trial randomized 48 of approximately 300 planned participants and closed for poor accrual. The irreversible inhibitor futibatinib produced an objective response rate of 42% with median progression-free survival of 9.0 months. The accelerated approvals of futibatinib and infigratinib rested on single-group trials, and randomized first-line trials of FGFR inhibitors have enrolled slowly.

Toxicity arises from inhibition of FGFR isoforms other than FGFR2. Hyperphosphatemia, attributed to FGFR1 inhibition, was reported from laboratory values in 93% of participants receiving pemigatinib and 88% receiving futibatinib, and 77% of futibatinib recipients received phosphate binders; diarrhea attributed to FGFR4 inhibition occurs in 15% to 36%. Retinal pigment epithelial detachment occurred in 11% with pemigatinib and 9% with futibatinib, nail toxicity in 42% of FIGHT-202 participants, and dose reductions for adverse reactions in 58% of futibatinib recipients.

Acquired resistance is common. Progression on reversible FGFR inhibitors is typically observed within 1 year, 49 of 82 participants (60%) had one or more secondary FGFR2 kinase domain mutations at acquired resistance, most often at the N550 molecular brake (63% of mutations) and the V565 gatekeeper (47%), and resistance is frequently polyclonal; new MAPK pathway alterations appeared in 9 of 17 participants with repeat sequencing. Every participant analysed at progression on pemigatinib had at least 1 acquired FGFR2 mutation, and after futibatinib FGFR2 kinase domain mutations were identified in 62% (23/37) of FGFR inhibitor-naive participants with cholangiocarcinoma, RAS mutations in 33% (14/43), and BRAF mutations in 21% (9/43). A second FGFR inhibitor produced an objective response rate of 13.6% and median progression-free survival of 3.8 months, against 47.6% and 8.5 months with the first. Median overall survival in advanced biliary tract cancer as a whole remains around 1 year.

Acquired resistance to futibatinib: frequency of kinase domain, RAS, and BRAF mutations at progression

“Among FGFR inhibitor-naive patients with cholangiocarcinoma, FGFR2 kinase domain mutations were identified in 62% (23/37) of patients, and among those who harbored at least one FGFR2 variant, the frequency of polyclonal resistance was 87%, and the mean number of variants was 3.6 (Table 3).” (opens the source at this quote in a new tab)

“Patients with a partial response exhibited the highest rate (100%, 11/11) and number of kinase domain mutations (mean 3.6), while those with progressive disease as their best overall response harbored the lowest rate (14%, 1/7) and number (mean 2.0).” (opens the source at this quote in a new tab)

“Substitutions affecting V565 were seen in 74% (20/27) of all patients with clinical benefit, including 86% (18/21) and 50% (2/4) of FGFR inhibitor-naive and -exposed patients, respectively, with cholangiocarcinoma.” (opens the source at this quote in a new tab)

“In the 43 patients with cholangiocarcinoma with post-progression ctDNA samples, RAS mutations were detected at progression in 33% (14/43) and BRAF mutations in 21% (9/43)” (opens the source at this quote in a new tab)

“Compared with mechanisms of acquired resistance to reversible FGFR inhibitors reported in previously published case series and case reports, RAS mutations, gatekeeper mutations, and polyclonality appear to emerge more frequently with futibatinib.” (opens the source at this quote in a new tab)

“Consequently, treatment selection following progression on FGFR inhibitors may require a tailored approach accounting for FGFR2 kinase domain mutations and alternative signaling pathways.” (opens the source at this quote in a new tab)

Place in treatment, anticipated use, and care setting
Summary: anticipated position of lirafugratinib

The FDA approved lirafugratinib on 23 September 2026 for adults with previously treated unresectable, locally advanced or metastatic cholangiocarcinoma harboring an FGFR2 fusion or other rearrangement. Efficacy was established in 116 participants who had received prior chemotherapy or chemoimmunotherapy and no FGFR inhibitor. Its place is therefore the one guidelines assign to FGFR inhibitors: after progression on at least one prior systemic line, which in current practice is gemcitabine and cisplatin with durvalumab or pembrolizumab, as an alternative to pemigatinib and futibatinib, with FOLFOX as the non-targeted second-line standard of care. Use depends on molecular testing that identifies the fusion or rearrangement.

Lirafugratinib differs from the approved FGFR inhibitors in selectivity. In vitro it shows more than 250-fold selectivity over FGFR1 and more than 5,000-fold over FGFR4, and it retained activity against FGFR2 resistance mutations, including V565 gatekeeper variants, in preclinical models. Hyperphosphatemia was reported as an adverse reaction in 21% of lirafugratinib recipients, whereas the pemigatinib and futibatinib labels report hyperphosphatemia from laboratory values in 93% and 88%; the definitions differ and no head-to-head comparison exists. Activity after a prior FGFR inhibitor was lower (see 2.2.2.3), and FGFR inhibitor-pretreated participants are outside the population in which approval efficacy was established. In an institutional cohort, median progression-free survival was 3.8 months with a second FGFR inhibitor and 8.5 months with the first, stable disease was achieved in 13 (59.1%) participants given a second FGFR inhibitor, and all 3 partial responses with a second FGFR inhibitor occurred with lirafugratinib; the authors conclude that the utility of a second FGFR inhibitor may depend on the nature of the resistance mechanism. Resistance profiles to lirafugratinib and futibatinib differ, and three participants who progressed on lirafugratinib responded to futibatinib, which supports sequencing guided by the resistance mutation detected.

Lirafugratinib is taken orally at 70 mg once daily until progression or unacceptable toxicity, which places care in the outpatient and specialty pharmacy setting with scheduled ophthalmologic examinations. The manufacturer expects United States availability by the fourth quarter of 2026.

Heterogeneity of treatment effect
Summary: modifiers of FGFR inhibitor treatment effect

Prior FGFR inhibitor exposure is the largest reported modifier of lirafugratinib activity. In the ReFocus dose-escalation analysis, the objective response rate among participants with FGFR2 fusion or rearrangement-positive cholangiocarcinoma was 52% (13 of 25) without and 14% (7 of 50) with prior FGFR inhibitor therapy, with median duration of response of 8.2 and 5.6 months. Resistance mutations explain part of the difference: 28 of 46 pretreated participants evaluable by circulating tumour DNA had at least one baseline FGFR2 resistance mutation, and the proportion with such mutations rose from 1 of 6 without prior FGFR inhibitor to 5 of 12 after one and 6 of 7 after two or more. Acquired resistance to lirafugratinib differs from that to pan-FGFR inhibitors, with FGFR2 M538 or L618 mutations in 11 of 16 cases and receptor tyrosine kinase or MAPK bypass alterations in 9 of 16.

Co-occurring alterations modify outcome with approved FGFR inhibitors. In a real-world pemigatinib cohort, median progression-free survival was 4.79 versus 8.66 months with and without CDKN2A mutations and 5.97 versus 8.52 months with and without BAP1 mutations, without a difference in overall survival. With futibatinib, progression-free survival was shorter with CDKN2B alterations (4.8 versus 11.0 months), responses did not correlate with fusion partner, and response rates did not differ by TP53 status. With pemigatinib in FIGHT-202, participants with TP53 alterations (n = 9) had no objective responses and a median progression-free survival of 2.8 months vs 9.0 months, CDKN2A/B alterations were associated with shorter median progression-free survival (6.4 months vs 9.0 months), and response did not differ between rearrangements and predicted fusions (40.0% vs 34.8%) or between BICC1 and other partners. In an institutional series, TP53 and CDKN2A/B alterations were associated with shorter overall survival and BAP1 had no prognostic effect. By alteration type, FGFR fusions were associated with the most favourable FGFR inhibitor outcomes (objective response rate 45.9%), with median progression-free survival of 7.3 months, against 4.1 months for mutations and 2.1 months for amplifications. Within second-line chemotherapy, FOLFOX benefit in ABC-06 was independent of platinum sensitivity and the number of elevated tumour markers stratified survival. In first-line chemoimmunotherapy, the survival benefits of durvalumab in TOPAZ-1 were generally consistent across the subgroups analysed, including PD-L1 tumour area positivity of 1% or greater and of less than 1%.

Lirafugratinib: ReFocus dose escalation outcomes by prior FGFR inhibitor exposure
OutcomeFGFR inhibitor-naive cholangiocarcinoma with FGFR2 fusion or rearrangement (N = 25)Prior FGFR inhibitor cholangiocarcinoma with FGFR2 fusion or rearrangement (N = 50)
Objective response rate, n (%) [95% CI]“13 (52% [31.3%-72.2%])”“7 (14% [5.8%-26.7%])”
Median duration of response, months (range)“8.2 (1.9-18.6)”“5.6 (1.9-7.4)”
Duration of response longer than 24 weeks“10/13 (77%)”“4/7 (57%)”
Response ongoing“6/13 (46%)”“2/7 (29%)”
Disease control rate, n (%)“22 (88%)”“40 (80%)”
Futibatinib outcomes by baseline ctDNA co-alteration in FOENIX-CCA2
Molecular subgroup (n)Objective response, n (%, 95% CI)P value for objective responseMedian PFS, months (95% CI)P value for PFS
FGFR2 fusion/rearrangement (93)“40 (43%, 33-53)”“8.9 (6.6-13.1)”
BAP1 unaltered (53)“26 (49%, 35-63)”“0.2”“8.0 (4.9-13.8)”“0.7”
BAP1 altered (40)“14 (35%, 21-52)”“9.0 (5.1-13.3)”
CDKN2A unaltered (73)“32 (44%, 32-56)”“0.8”“9.7 (6.9-13.8)”“0.2”
CDKN2A altered (20)“8 (40%, 19-64)”“4.9 (3.4-13.3)”
CDKN2B unaltered (77)“33 (43%, 32-55)”“1.0”“11.0 (7.2-15.1)”“0.03”
CDKN2B altered (16)“7 (44%, 20-70)”“4.8 (3.4-4.9)”
TP53 unaltered (80)“35 (44%, 33-55)”“0.8”“9.0 (6.6-13.3)”“0.2”
TP53 altered (13)“5 (39%, 14-68)”“7.0 (1.4-13.8)”
PBRM1 unaltered (84)“38 (45%, 34-56)”“0.3”“9.0 (6.7-13.1)”“0.2”
PBRM1 altered (9)“2 (22%, 2.8-60)”“4.8 (1.2-NC)”
Preclinical determinants of FGFR2 fusion dependence: fusion identity, tumour suppressor background, and gatekeeper-resistant mutants

“Clinical responses to FGFR kinase inhibitors in CCA are often of modest durability.” (opens the source at this quote in a new tab)

“a number of mutations causing single amino acid substitutions in the FF TKD were found to be a genetic determinant of secondary resistance, due to their ability to impair drug-target interactions.” (opens the source at this quote in a new tab)

“The penetrance of this tumorigenic phenotype was influenced by FF identity.” (opens the source at this quote in a new tab)

“We observed that structurally different FFs diverged in terms of oncogenic potential.” (opens the source at this quote in a new tab)

“A recent study reported that FGFR2-AHCYL1 was tumorigenic when expressed in Cdkn2a-null mouse liver organoids” (opens the source at this quote in a new tab)

“Therefore, it is possible that FF-driven iCCA pathogenesis might be influenced by the genetic background generated by loss of a specific tumor suppressor gene on one side and still unclear biological properties intrinsic to individual FFs on the other.” (opens the source at this quote in a new tab)

“We also generated an iCCA model driven by the BGJ398-resistant FGFR2-TACC3 V565F mutant (Fig. 2C and S11A-D) and determined that the resulting F-TKI-resistant tumoroids (Fig. S11E, F) were also dependent on Erk1/2 signaling (Fig. S11G).” (opens the source at this quote in a new tab)

“The advantage offered by the B+T combo in our experiments must also be considered in light of the finding that TP53 mutations are associated with an aggressive disease course and less favorable responses to single agent FGFR TKIs in iCCA with FGFR2 rearrangements.” (opens the source at this quote in a new tab)

FGFR inhibitor survival by alteration type, FGFR gene, and tumor type in an institutional cohort
Co-occurring tumor suppressor alterations and fusion partner and outcomes with pemigatinib in FIGHT-202

“Among FGFR2-rearranged versus non-FGFR2-rearranged patients, the most frequent co-alterations were BAP1 (38.4% vs 8.2%), CDKN2A (21.7% vs 30.0%), CDKN2B (15.2% vs 20.2%), and PBRM1 (9.4% vs 10.7%) (Fig. 2D).” (opens the source at this quote in a new tab)

“ORR was higher in BAP1 altered versus unaltered patients but did not reach statistical significance (43.6% vs 30.9%, P = 0.19).” (opens the source at this quote in a new tab)

“Patients with GAs in CDKN2A/B or PBRM1 alterations trended toward a lower ORR (CDKN2A/B, 23.8% vs 38.4%, P = 0.22; PBRM1, 30.0% vs 36.1%; P = 0.70), although not statistically significant, and significantly shorter median PFS (CDKN2A/B, 6.4 months vs 9.0 months, P = 0.03; PBRM1, 4.7 months vs 7.0 months, P = 0.05).” (opens the source at this quote in a new tab)

“Of note, patients with TP53 alterations (n = 9) had no objective responses and significantly shorter median PFS (2.8 months vs 9.0 months, P = 0.0003) (Table 1 and Fig. 4B).” (opens the source at this quote in a new tab)

“This group of patients, accounting for 63% of all patients, had significantly shorter median PFS although ORR was similar between the two groups.” (opens the source at this quote in a new tab)

“No significant difference in ORR was observed for patients with FGFR2 alterations classified as rearrangements versus for patients with predicted fusions (40.0% vs 34.8%, P = 0.70).” (opens the source at this quote in a new tab)

“Importantly, we saw no differences in clinical response to pemigatinib in patients with BICC1 versus other partners.” (opens the source at this quote in a new tab)

“However, the small number of patients, particularly with TP53 or PBRM1 alterations, must be acknowledged as a limitation.” (opens the source at this quote in a new tab)

Care management intervention strategies
Summary: testing, monitoring, and supportive care relevant to lirafugratinib

Care management starts with molecular profiling at initiation of first-line systemic therapy, using a method able to detect FGFR2 fusions with unknown partners, so that an FGFR2 fusion or rearrangement is known before progression. During lirafugratinib therapy, a comprehensive ophthalmological examination including optical coherence tomography of the macula is required before initiation, every 2 months for the first 13 months, and every 4 months thereafter, with urgent evaluation for visual symptoms; retinal pigment epithelial detachment occurred in 31% of recipients (grade 3 in 1.8%) at a median of 57 days, and dry eye in 38%, treated with ocular demulcents. The corresponding schedule for pemigatinib and futibatinib is every 2 months for the first 6 months and every 3 months thereafter. Serum phosphate is monitored throughout treatment; hyperphosphatemia occurred in 21% of lirafugratinib recipients at a median of 15 days, and phosphate binders were required in 7 (1.8%), whereas the pemigatinib and futibatinib labels specify a low-phosphate diet and phosphate-lowering therapy at defined serum thresholds. Effective contraception is required during treatment and for 6 months (females) or 3 months (males with female partners) after the last dose.

Disease-directed care continues alongside targeted therapy: follow-up every 8 to 12 weeks with CT or MRI and CA 19-9 or CEA where secreted, biliary drainage for obstruction, prompt treatment of biliary sepsis, and education on stent patency. Serial circulating tumour DNA can detect emerging resistance mutations before radiologic progression.

Other product development or post-marketing obligations required by the FDA
Postmarketing requirement 5057-1: timetable
MilestoneDate
Draft protocol submission“01/2027”
Final protocol submission“05/2027”
Trial completion“11/2031”
Final report submission“05/2032”
Postmarketing requirement 5057-2: timetable
MilestoneDate
Draft protocol submission“01/2027”
Final protocol submission“05/2027”
Trial completion“05/2032”
Final report submission“09/2032”
Postmarketing commitment 5057-3: timetable
MilestoneDate
Study completion“01/2029”
Final report submission“09/2029”
Ongoing post-approval monitoring
Confirmatory trial registration

No evidence found.

Expected outcomes of therapy
Summary: expected outcomes and the benchmarks they are measured against

In the 116 FGFR inhibitor-naive participants of the REFOCUS pivotal cohort, the FDA reports an objective response rate of 46% (95% CI 36 to 55) by independent review and a median duration of response of 11.8 months (95% CI 7.5 to 13.0). The manufacturer reports median progression-free survival of 11.3 months (95% CI 9.2 to 14.8) with a 12-month rate of 49.2%, and the congress report of the same cohort gives median overall survival of 22.8 months (95% CI 17.3 to 27.2) with a 12-month rate of 74.6%, responses lasting more than 6 months in 76.2% of responders, treatment-related dose reductions in 75.9%, and discontinuation for treatment-related adverse events in 4.3%.

These values come from a single-arm trial and are read against cross-trial benchmarks: pemigatinib, objective response rate 37.0%, median progression-free survival 7.0 months, and median overall survival 17.5 months (FIGHT-202 final analysis); futibatinib, 42%, 9.0 months, and 21.7 months (FOENIX-CCA2); and FOLFOX in unselected second-line biliary tract cancer, 5%, 4.0 months, and 6.2 months (ABC-06). In routine care, median overall survival among 221 United States participants who initiated pemigatinib was 15.9 months, and in a Canadian patient support program median real-world progression-free survival with pemigatinib was 12.1 months. Quality of life was stable over 9.0 months of futibatinib in FOENIX-CCA2; no quality-of-life result for lirafugratinib was identified in the cited sources.